Moving Docker setup from win to linux

I'm setting up a new server, and I'm moving my Immich server over to the new machine. Even though it's docker, there are some differences in the system paths between the server:
  • The OS is changing from Windows to Ubuntu server LTS
  • my file storage setup is changing as well. Right now, the current server has a big data drive storing the immich server and all of my files are imported directly into the library. My new server has a ZFS pool where I'd like to keep files, but not containers.
Can I move the immich containers outside of that pool and just redirect immich to ZFS folders with all the files?
Are there other windows -> linux gotchas I should be looking out for?
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