The Witcher 3 - SteamDeck Controls Issue

Hi guys, I'm losing my mind a little with this problem. I'm running GOGs GoTY edition DX11, at first I had no issues but now when the game boots it doesn't use any normal controller layout. Once in game I can't I move around or do anything except navigate the menus. I've tried repairing and reinstalling, running through Steam but it hasn't fixed it. I'd really appreciate some help.
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