yeah if you have the automatic dependencies feature turned on that should pull that stuff in, and gog games now also install the dependencies listed by the manifest
so you should be pretty good to go there, the hitch is on your mod.. where did you place the mod folder? (full linux path is probably the right one to show)
it loads the mods from there just fine, the game runs just fine, the only problem is, that once i quit and shut down, then reboot, it seems to lose its boot sequence or something, it just wont boot normally
it doesnt, so long as everything is on a linux partition (not ntfs or fat32 or exfat) it should be fine. Wine handles all the windows file system calls