Epic Games Store and Steam Deck Controller Input

I am using Steam Deck and some time ago playing games from Epic Games Store worked fine.
But as of a few weeks, Games from the EGS do not default to Controller input. This started after a Heroic Launcher Update.

I found that it defaults to Controller ONLY in Desktop Mode, but when starting from the Steam Gaming Overlay, it does not work.
I always have do load custom Controls from Steam Community to make the Controller Input work.

GOG works totally fine still, its plug and play.
Any ideas?
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