rsyncing through ssh over cloudflare tunnel

I see a lot of tutorials and details about sshing through your web browser and such, but is there a way to transfer files over ssh if I'm using a cloudflare tunnel? I just setup a tunnel within a docker container on a server and it's currently hosting a website, so I kow that the actual tunnel works properly, but I don't know how I would be able to use it to ssh files to my server?
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