Is this for a commercial project? How imperative is it that either the source or the binary are encrypted? What are you concerned about protecting against? IP theft/cloning? Vulnerabilities? Something else?
There are commercial products like IAR Embedded Trust that provide application encryption and other security measures. And other services that encrypt binaries. Of course, those aren't FOSS..
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EdgeBench is a remote platform that lets developers build, test, and evaluate embedded applications on real hardware through a browser.