This one I already have a solution, I'm just posting this for folks who might stumble upon this problem. When trying to change Gear Lever's AppImage destination folder, literally nothing happens, it throws a silent error to the terminal. The contained message is 'The folder must be in your home directory', so my initial guess was that it didn't consider /var/home/$USER(where the file chooser starts) to be a valid home directory. Sure enough, after analysing the source code, the only checked path is /home/$USER.