Flatpak version is resolving the Steam Deck's SD card as the wrong path

I just updated to v2.5.0 with the flatpak version on a Steam Deck. The install paths on the SD card, normally /run/media/mmcblk0p1/Heroic/<game> is resolving as /run/user/1000/doc/<numbers>/<game>/. Other times this issue has come up, it has been a permissions problem, but
/run/media
is already enabled by default.

Adding an additional /run/media/mmcblk0p1 permission does not fix the problem.

I have also attempted deletion of
~/.var/app/com.heroicgameslauncher.hgl/
to start fresh, but it also doesn't fix the problem when the config is recreated.

I have run flatpak install --reinstall com.heroicgameslauncher.hgl and also did a full uninstall/reinstall.
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