Pushed my changes to git, it has all the proper permissions and would deploy automatically previously. Haven't changed anything, but it isn't deploying. Any ideas?
Can you elaborate on "it isn't deploying". When you go into the Pages overview screen, it will show the deployments, and any builds that have failed. You should look there first for further insight.
Whenever I make a commit. It has automatic deployments enabled, it's connected properly to github with the cloudflare pages integration and has access to all repos.
In your repo, go to settings, and then 'Github Apps', you should then see the Cloudflare app if its still connected properly, from there you click on configure and you can verify the connection still has access to the repo