Crooked Gantry, Bad IS (Solved)

Hello, I recently upgraded and as part of my diagnosis of some IS issues, I noticed how crooked my gantry is. While I had previously corrected this by tensioning the belt. I have noticed that my belt tension graph did not appear to be changing. I loosened all the fasteners on the y gantry blocks, the belts are slack, but it is still crooked. The left y carriage with its blocks loosened does not mate against the endstop.

My understanding of the guide is that I am to pretension the belt then screw the gantry plate back into place, and this is what I had done. But is this just covering up the issue? The carriages slide smoothly, which suggests to me that the issue is not a misalignment of the rails.
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